Data Champions Search

Jonathan Birchall, PhD

Research Associate

Department of Radiology

Areas Of Expertise:

Git, Matlab, Data visualisation, Big data, Statistical analysis, Data collection, Data architecture, Version control, Experimental design, Data storage, Code sharing, Writing/publishing data papers, Surveys, Imaging, Textual data, Digital illustration

Contact Information

jb2455@cam.ac.uk

ORCiD:

0000-0003-3920-4038

Biography

I am currently a Research Associate in the Gallagher Group, where my goals are to develop novel screening techniques for cancer using pre-clinical hyperpolarised 13C-MRI, with an aim towards evaluation, documentation and eventual translation of these techniques into human imaging. This work is jointly funded by the University and The National Cancer Imaging Translational Accelerator (NCITA), where I am a member of the QA/QC Unit responsible for developing Standard Operating Procedures and performing data analysis on NCITA exemplar studies towards the creation of an MRI Core Lab.

I received my PhD from the University of Nottingham in 2017, researching experimental methods for improving 129Xe hyperpolarisation with an application to clinical functional lung imaging. I continued in a postdoctoral role for one year, performing QA/QC duties for the clinical Hyperpolarised Imaging Lung Facility (HILF), before moving to Wayne State University, Detroit, USA to take up a 2.5 year postdoctoral role developing pre-clinical hyperpolariser technologies for 13C, 15N and 129Xe.

I have always had a passion for statistics and communication, and as a Data Champion in the Department of Radiology, I hope that I can collaborate with my peers across a diverse range of projects, advocating for good record-keeping, analysis, dissemination and other facets of research data management.

Andrzej Harris, PhD

Research Associate

Department of Biochemistry

Areas Of Expertise:

Python, Matlab, Data visualisation, Data collection, Experimental design, Data sharing, Data archiving, Bioinformatics

Contact Information

ORCiD:

Biography

I am a Research Associate in the Department of Biochemistry, where I specialise in electron cryo-microscopy (cryo-EM). I use cryo-EM data for the reconstruction and computational modelling of antibiotic transport by bacterial tripartite efflux pumps and related membrane proteins.

Aurora Gao

PhD student

Areas Of Expertise:

Data collection, Experimental design, Discipline-specific repositories, Open data, Textual data, Audiovisual data, Workshop delivery, Social media & digital communications, Website development

Contact Information

ORCiD:

Biography

Aurora is a PhD student at the University of Cambridge. Prior to earning her MPhil degree from Cambridge with Distinction and Best Dissertation Award, she majored in Spanish and minored in Psychology with a First and Best Dissertation Award. Her research lies at the intersection of applied linguistics, psychology, and sociology. In addition to research training in areas such as experimental design, she is particularly interested in digital scholarship and open research.

Brandon Smith PhD

Post-doctoral Researcher

Department of Engineering

Areas Of Expertise:

Data collection, Experimental design, Sensitive data, Research data ethics, Data storage, Data sharing, Writing/publishing data papers, Textual data, Audiovisual data, REDCap, Video editing, Digital illustration, Workshop delivery, Social media & digital communications, Website development

Contact Information

ORCiD:

Biography

My interests lie in the ideation, innovation and translation processes for healthcare technologies in resource-limited settings. I am a Postdoctoral Research Associate in the International Health Systems Group (IHSG), Department of Engineering, funded by the NIHR Global Health Research Group on Acquired Brain and Spine Injury.

Dillan Saunders

PhD Student

Department of Genetics

Areas Of Expertise:

Discipline-specific repositories, Data analysis, Data collection, Data architecture, Experimental design, Imaging, Illustration

Contact Information

ddzs2@cam.ac.uk

@DillanDZ

ORCiD:

0000-0001-5169-5488

Biography

I am a PhD student in developmental biology in Ben Steventon’s lab. Through being part of the Data Champions network I hope to learn more about the management of data and share this understanding, as it develops, with my community. I hope to be a part of making academic research more accountable, accessible, and communal.

Florian Markowetz, PhD

Senior Group Leader

Cancer Research UK Cambridge Institute

Areas Of Expertise:

Big data, Discipline-specific repositories, Data analysis, Bioinformatics, Coding, R language, Git, Matlab, Data visualisation, Data mining, Machine learning, Statistical analysis, Experimental design, Imaging, Workshop delivery, Social media and digital communications

Contact Information

fm327@cam.ac.uk

@markowetzlab

ORCiD:

0000-0002-2784-5308

Biography

Florian Markowetz is a Senior Group Leader at the Cancer Research UK Cambridge Institute. He is a Royal Society Wolfson Research Merit Award holder and received a CRUK Future Leader in Cancer Research prize. He holds degrees in Mathematics (Dipl. math.) and Philosophy (M.A.) from the University of Heidelberg and a Dr. rer. nat. (PhD equivalent) in Computational Biology from Free University Berlin, for which he was awarded an Otto-Hahn Medal by the Max Planck Society. His group at the CRUK Cambridge Institute combines computational work on cancer evolution and image analysis of the tumour tissue with experimental work on understanding key cancer mechanisms like the estrogen receptor.

Hugo Tavares, PhD

Postdoctoral Research Associate

Department of Genetics

Bioinformatics Training Facility

Areas Of Expertise:

Bioinformatics, Coding, Python, R language, Git, Data analysis, Data visualisation, Big data, Data mining, Machine learning, Statistical analysis, Data collection, Experimental design, Data storage, Institutional repositories, Discipline-specific repositories, Data sharing, Code sharing, Open data, Workshop delivery

Contact Information

hm533@cam.ac.uk

Biography

Additional areas of expertise:

Plant science, Quantitative genetics.

Lucy Chambers

Senior Research Officer

Cambridge University Press and Assessment

Areas Of Expertise:

Data Management Plans, Data collection, Experimental design, Surveys, Workshop delivery

Contact Information

chambers.l@cambridgeassessment.org.uk

ORCiD:

0000-0002-6039-8175

Máté Aller

Research Associate

MRC Cognition and Brain Sciences Unit

Areas Of Expertise:

Python, Git, Matlab, Data visualisation, Data mining, Machine learning, Statistical analysis, Data collection, Version control, Experimental design, Data storage, Data sharing, Code sharing, Open data, Imaging

Contact Information

mate.aller@mrc-cbu.ac.uk

Website

My LinkedIn Profile

Biography

I am a neuroscientist studying human speech perception with the aim of advancing assistive speech (neuro)technologies and AI speech recognition systems. My background is in cognitive neuroscience and medicine.

I am an expert in human neurophysiology methods (electro- and magnetoencephalography, EEG/MEG) combined with machine learning and artificial neural network modelling (deep learning).

Since the beginning of my PhD, I’ve been passionate about reproducible and open science practices such as data and code sharing, and good coding practices including version control. In my department I am leading the adoption of the standardised Brain Imaging Data Structure (BIDS) for storing and sharing human neurophysiology (MEG/EEG) data.

Qi Wang, PhD

Bioinformatician

Department of Plant Sciences

Areas Of Expertise:

Big data, Data analysis, Bioinformatics, Coding, Python, R language, SQL, Git, Data visualisation, Data mining, Machine learning, Statistical analysis, Experimental design, Data storage, Discipline-specific repositories, Data sharing, Code sharing, Writing/publishing data papers, Workshop delivery

Contact Information

qw254@cam.ac.uk

ORCiD:

0000-0002-6420-1720

Biography

Qi received her PhD at the University of California, Los Angeles, where she developed computational methods to study alternative splicing and the evolution of HIV. Later she joined the UCLA Division of Dermatology to help identify the resistance mechanisms of targeted cancer therapies using computational tools.

In 2011 she was awarded the Humboldt Research Fellowship to work in the Division of Theoretical Bioinformatics, and later the Division of Applied Bioinformatics, at the German Cancer Research Centre. There she worked on diverse bioinformatics projects with NGS data, such as studying genome-wide epigenetic regulation of cell differentiation, developing sequencing protocols and detecting somatic mutations from whole-genome sequencing data, as well as data integration and predictive modelling.

Currently, she provides bioinformatics training and support to PhD students and postdoctoral researchers in the lab of Professor Beverley Glover.

Jonathan Birchall, PhD

Contact Information

Biography

Andrzej Harris, PhD

Contact Information

Biography

Aurora Gao

Contact Information

Biography

Brandon Smith PhD

Contact Information

Biography

Dillan Saunders

Contact Information

Biography

Florian Markowetz, PhD

Contact Information

Biography

Hugo Tavares, PhD

Contact Information

Biography

Lucy Chambers

Contact Information

Máté Aller

Contact Information

Biography

Qi Wang, PhD

Contact Information

Biography

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