Data Champions Search

Jonathan Birchall, PhD

Research Associate

Department of Radiology

Areas Of Expertise:

Git, Matlab, Data visualisation, Big data, Statistical analysis, Data collection, Data architecture, Version control, Experimental design, Data storage, Code sharing, Writing/publishing data papers, Surveys, Imaging, Textual data, Digital illustration

Contact Information

jb2455@cam.ac.uk

ORCiD:

0000-0003-3920-4038

Biography

I am currently a Research Associate in the Gallagher Group, where my goals are to develop novel screening techniques for cancer using pre-clinical hyperpolarised 13C-MRI, with an aim towards evaluation, documentation and eventual translation of these techniques into human imaging. This work is jointly funded by the University and The National Cancer Imaging Translational Accelerator (NCITA), where I am a member of the QA/QC Unit responsible for developing Standard Operating Procedures and performing data analysis on NCITA exemplar studies towards the creation of an MRI Core Lab.

I received my PhD from the University of Nottingham in 2017, researching experimental methods for improving 129Xe hyperpolarisation with an application to clinical functional lung imaging. I continued in a postdoctoral role for one year, performing QA/QC duties for the clinical Hyperpolarised Imaging Lung Facility (HILF), before moving to Wayne State University, Detroit, USA to take up a 2.5 year postdoctoral role developing pre-clinical hyperpolariser technologies for 13C, 15N and 129Xe.

I have always had a passion for statistics and communication, and as a Data Champion in the Department of Radiology, I hope that I can collaborate with my peers across a diverse range of projects, advocating for good record-keeping, analysis, dissemination and other facets of research data management.

Abdulwahab Alshallal

PhD Student

Areas Of Expertise:

Python, R language, Data visualisation, Big data, Statistical analysis, Research data ethics, Writing/publishing data papers

Contact Information

ORCiD:

Biography

Abdulwahab is a PhD student in Physical Activity Epidemiology, advised by Dr. Soren Brage at the MRC Epidemiology Unit, University of Cambridge. He is a recipient of the Kuwaiti High Science Achiever PhD Scholarship by the Kuwait Foundation for the Advancement of Sciences and the Kuwait Chamber of Commerce and Industry and was previously awarded a full Bachelor's and Master's Scholarship from the Kuwait Ministry of Higher Education. His interests lie in the analysis of accelerometer-measured physical activity data in different populations and related disease endpoints. He previously studied adolescent physical activity behavior in relation to mental well-being. His current research interest is in the analysis of physical activity behavior in the Arabian Gulf in relation to metabolic disease incidence.

Ali Abbas, PhD

Senior Data Scientist, MRC Epidemiology Unit

Areas Of Expertise:

Python, R language, Git, SQL, C/C++/C# language, Java, Data visualisation, Big data, Data mining, Machine learning, Statistical analysis, Version control, Data sharing, Code sharing, Open data, FAIR Data, Writing/publishing data papers, Geospatial data

Contact Information

aa797@cam.ac.uk

Biography

Ali is Senior Data Scientist and public-health/transport modeller in the Public Health Modelling (PHM) group at the MRC-Epidemiology Unit, University of Cambridge. He is interested in active travel, specifically cycling research.

Coming from a Computer Science background, with a focus on modelling in his PhD, for over a decade, he has been doing data-driven research and development. This includes Exploratory Data Analysis (EDA), Statistical Modelling (or Machine Learning), Interactive Visualization, all with a focus on collaborative, transparent and reproducible research. In addition, he leads in project management and managing, training, guiding, and teaching of junior staff in his Unit. His work can be seen on GitHub at https://github.com/usr110.

Andrew Gill, PhD

Research Associate

Areas Of Expertise:

Python, Matlab, Data Management Plans, Data collection, Research data ethics, Data storage, Discipline-specific repositories, Imaging

Contact Information

abg28@cam.ac.uk

ORCiD:

0000-0002-9287-9563

Biography

I am a post-doctoral physicist working in the Department of Radiology, with a background in programming and a particular interest in medical image analysis and software design. I am currently involved in setting up and maintenance of processes for data storage, sharing and archiving for the department - with particular emphasis on medical research image data.

Fiona Love

Research Associate

Cambridge Institute for Medical Research

Areas Of Expertise:

Electronic Laboratory Notebooks, Code sharing, Data analysis, Version control, R language, Git, Data visualisation

Contact Information

ORCiD:

Hugo P. Bastos, PhD

Postdoctoral Research Associate, Haematology/Cambridge Stem Cell Institute

Areas Of Expertise:

Python, R language, SQL, Data visualisation, Machine learning, Statistical analysis, Database design, Data storage, Bioinformatics

Contact Information

hpb29@cam.ac.uk

ORCiD:

0000-0002-8072-4070

Biography

I provide Bioinformatic support for a few research groups in the Cambridge Stem Cell Institute. For the most part I deal with the analysis of single cell sequencing data, storage management of such data and the deployment of data processing pipelines into HPC environments.

Junaid Bhatti

Research Development and Innovation Manager

Department of Psychiatry

Areas Of Expertise:

SQL, Data Management Plans, Data collection, Database design, Data architecture, Sensitive data, Research data ethics, Data protection and research, Discipline-specific repositories, Data sharing, Data archiving, Open data, Surveys, Imaging, Textual data, REDCap, Socal media and digital communications, Video editing, Illustration, Website development

Contact Information

jb898@medschl.cam.ac.uk

Biography

I’ve been working in the Department of Psychiatry for almost a decade now. I specialise in improving process and workflow and in research data management. I also work in branding, digital recruitment, website design and administration, social media management, and data architecture. I am particularly good at thinking of new and creative solutions to emerging problems. I am currently working on ways to govern and organise the many research projects within my department and in the School of Clinical Medicine, and on creating ways to share research and imaging data (MRI, PET etc) openly.

Luisa Fassi

PhD Student

Areas Of Expertise:

R language, Statistical analysis, Experimental design, Data sharing, Code sharing, Open data, Writing/publishing data papers

Contact Information

Luisa.Fassi@mrc-cbu.cam.ac.uk

@FassiLuisa

ORCiD:

0000-0002-0520-6425

Biography

I am a PhD student based at the Cognition and Brain Sciences Unit and the Department of Psychiatry at the University of Cambridge. My research is aimed at disentangling the relationship between technology use and youth mental health. I am passionate about Open Science, and I am a junior representative of Rotterdam RIOT a science club that promotes reproducible, interpretable, open and transparent research practices. Before my PhD, I graduated in Psychology from Erasmus University Rotterdam and subsequently attended an MSc in Research Methods at the University of Oxford.

Mark Fernandes

Bioinformatics Training Developer

Cancer Research UK Cambridge Institute

Areas Of Expertise:

File sharing systems, Big data, Discipline-specific repositories, Repositories (general), Licensing, Copyright, Sensitive data, Code sharing, Bioinformatics, RDM training, Coding, Python, R language, SQL, Git, Database design, Data storage, Workshop delivery, Social media and digital communications, Video editing, Website development

Contact Information

mark.fernandes@cruk.cam.ac.uk

@MAFatCRUK

My LinkedIn Profile

Biography

I have over 30 years experience of Scientific Computing. I have worked on Image analysis of Light Microscopy images, Scientific IT Support (13 years), Data-driven web applications of mathematical models and Bioinformatics Training at the Institute of Food Research (Now the Quadram Institute). I have been involved in an EU Framework Database Workshop. I strive to include good data-handling and reproducibility practices into all training materials.

Raquel Manzano

Bioinformatician

Cancer Research UK Cambridge Institute

Areas Of Expertise:

Big data, Sensitive data, Code sharing, Data analysis, Bioinformatics, Coding, Python, R language, Git, Data visualisation, Data mining, Machine learning, Statistical analysis, Electronic Lab Notebooks, Data collection, Version control, Data storage, Institutional repositories, Discipline-specific repositories, Data sharing, Data archiving, Workshop delivery

Contact Information

raquel.manzanogarcia@cruk.cam.ac.uk

My LinkedIn Profile

ORCiD:

0000-0002-5124-8992

Biography

I am bioinformatician who has been working in Cancer Research UK Cambridge Institute since 2017. I have a background in biology and have experience with HPC, version control, R and python, and confidential data. I work with big volumes of cancer patient data on a daily basis.

Additional areas of expertise:

High Performance Computing (HPC) - cluster.

Jonathan Birchall, PhD

Contact Information

Biography

Abdulwahab Alshallal

Contact Information

Biography

Ali Abbas, PhD

Contact Information

Biography

Andrew Gill, PhD

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Biography

Fiona Love

Contact Information

Hugo P. Bastos, PhD

Contact Information

Biography

Junaid Bhatti

Contact Information

Biography

Luisa Fassi

Contact Information

Biography

Mark Fernandes

Contact Information

Biography

Raquel Manzano

Contact Information

Biography

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