Data Champions Search

Alexia Cardona, PhD

Bioinformatics Training Developer

Department of Genetics

Areas Of Expertise:

R language, Git, Data visualisation, Big data, Data analysis, Bioinformatics, Workshop delivery, Social media and digital comms.

Contact Information

alexia.cardona@mrc-epid.cam.ac.uk

ORCiD:

0000-0002-7877-5565

Before joining the University of Cambridge I was a Software Engineer. Since then I have been working on different research projects across different Departments at the University investigating the epigenetics of obesity, diabetes and related metabolic disorders and human evolutionary genetics. I am currently the Bioinformatics Training Developer for the Bioinformatics Training Programme at the University.

Andrzej Harris, PhD

Research Associate

Department of Biochemistry

Areas Of Expertise:

Python, Matlab, Data visualisation, Data collection, Experimental design, Data sharing, Data archiving, Bioinformatics

Contact Information

ORCiD:

Biography

I am a Research Associate in the Department of Biochemistry, where I specialise in electron cryo-microscopy (cryo-EM). I use cryo-EM data for the reconstruction and computational modelling of antibiotic transport by bacterial tripartite efflux pumps and related membrane proteins.

Davide Chiarugi, PhD

Head of Bioinformatics

Institute of Metabolic Science

Areas Of Expertise:

Big data, Data analysis, Bioinformatics, Statistics, R language, Matlab, Coding, Data visualisation, Statistical analysis

Contact Information

dc702@medschl.cam.ac.uk

My LinkedIn Profile

ORCiD:

0000-0003-2752-3189

Florian Markowetz, PhD

Senior Group Leader

Cancer Research UK Cambridge Institute

Areas Of Expertise:

Big data, Discipline-specific repositories, Data analysis, Bioinformatics, Coding, R language, Git, Matlab, Data visualisation, Data mining, Machine learning, Statistical analysis, Experimental design, Imaging, Workshop delivery, Social media and digital communications

Contact Information

fm327@cam.ac.uk

@markowetzlab

ORCiD:

0000-0002-2784-5308

Biography

Florian Markowetz is a Senior Group Leader at the Cancer Research UK Cambridge Institute. He is a Royal Society Wolfson Research Merit Award holder and received a CRUK Future Leader in Cancer Research prize. He holds degrees in Mathematics (Dipl. math.) and Philosophy (M.A.) from the University of Heidelberg and a Dr. rer. nat. (PhD equivalent) in Computational Biology from Free University Berlin, for which he was awarded an Otto-Hahn Medal by the Max Planck Society. His group at the CRUK Cambridge Institute combines computational work on cancer evolution and image analysis of the tumour tissue with experimental work on understanding key cancer mechanisms like the estrogen receptor.

Hugo P. Bastos, PhD

Postdoctoral Research Associate, Haematology/Cambridge Stem Cell Institute

Areas Of Expertise:

Python, R language, SQL, Data visualisation, Machine learning, Statistical analysis, Database design, Data storage, Bioinformatics

Contact Information

hpb29@cam.ac.uk

ORCiD:

0000-0002-8072-4070

Biography

I provide Bioinformatic support for a few research groups in the Cambridge Stem Cell Institute. For the most part I deal with the analysis of single cell sequencing data, storage management of such data and the deployment of data processing pipelines into HPC environments.

Hugo Tavares, PhD

Postdoctoral Research Associate

Department of Genetics

Bioinformatics Training Facility

Areas Of Expertise:

Bioinformatics, Coding, Python, R language, Git, Data analysis, Data visualisation, Big data, Data mining, Machine learning, Statistical analysis, Data collection, Experimental design, Data storage, Institutional repositories, Discipline-specific repositories, Data sharing, Code sharing, Open data, Workshop delivery

Contact Information

hm533@cam.ac.uk

Biography

Additional areas of expertise:

Plant science, Quantitative genetics.

Izzy Newsham

PhD student

MRC Biostatistics Unit

Areas Of Expertise:

Python, R language, Git, Data visualisation, Big data, Machine learning, Bioinformatics

Contact Information

in268@cam.ac.uk

ORCiD:

0000-0003-0816-4045

Biography

I am a PhD student at the MRC Biostatistics Unit, interested in applying machine learning techniques to biological data. I have worked on classification of cancer (sub)types using XGBoost models. I am currently working on trying to uncover biological details about the immune system using graph data and graph machine learning.

Jiayin Hong, PhD

Research Associate

Department of Biochemistry

Areas Of Expertise:

Python, R language, Git, SQL, Matlab, Data visualisation, Big data, Data mining, Machine learning, Statistical analysis, Electronic Lab Notebooks, Version control, Bioinformatics, Workshop delivery

Contact Information

jh2313@cam.ac.uk

My LinkedIn Profile

ORCiD:

0000-0002-2212-558X

Biography

Jiayin is a postdoctoral research associate at the Department of Biochemistry. Holding a Ph.D in Integrated Life Sciences and Physics, Jiayin is passionate about unraveling intricate mechanisms in epigenetics, transcriptional regulation, and cancer biology. Her approach blends experimental techniques with computational methods.

Mark Fernandes

Bioinformatics Training Developer

Cancer Research UK Cambridge Institute

Areas Of Expertise:

File sharing systems, Big data, Discipline-specific repositories, Repositories (general), Licensing, Copyright, Sensitive data, Code sharing, Bioinformatics, RDM training, Coding, Python, R language, SQL, Git, Database design, Data storage, Workshop delivery, Social media and digital communications, Video editing, Website development

Contact Information

mark.fernandes@cruk.cam.ac.uk

@MAFatCRUK

My LinkedIn Profile

Biography

I have over 30 years experience of Scientific Computing. I have worked on Image analysis of Light Microscopy images, Scientific IT Support (13 years), Data-driven web applications of mathematical models and Bioinformatics Training at the Institute of Food Research (Now the Quadram Institute). I have been involved in an EU Framework Database Workshop. I strive to include good data-handling and reproducibility practices into all training materials.

Qi Wang, PhD

Bioinformatician

Department of Plant Sciences

Areas Of Expertise:

Big data, Data analysis, Bioinformatics, Coding, Python, R language, SQL, Git, Data visualisation, Data mining, Machine learning, Statistical analysis, Experimental design, Data storage, Discipline-specific repositories, Data sharing, Code sharing, Writing/publishing data papers, Workshop delivery

Contact Information

qw254@cam.ac.uk

ORCiD:

0000-0002-6420-1720

Biography

Qi received her PhD at the University of California, Los Angeles, where she developed computational methods to study alternative splicing and the evolution of HIV. Later she joined the UCLA Division of Dermatology to help identify the resistance mechanisms of targeted cancer therapies using computational tools.

In 2011 she was awarded the Humboldt Research Fellowship to work in the Division of Theoretical Bioinformatics, and later the Division of Applied Bioinformatics, at the German Cancer Research Centre. There she worked on diverse bioinformatics projects with NGS data, such as studying genome-wide epigenetic regulation of cell differentiation, developing sequencing protocols and detecting somatic mutations from whole-genome sequencing data, as well as data integration and predictive modelling.

Currently, she provides bioinformatics training and support to PhD students and postdoctoral researchers in the lab of Professor Beverley Glover.

Alexia Cardona, PhD

Contact Information

Biography

Andrzej Harris, PhD

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Biography

Davide Chiarugi, PhD

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Florian Markowetz, PhD

Contact Information

Biography

Hugo P. Bastos, PhD

Contact Information

Biography

Hugo Tavares, PhD

Contact Information

Biography

Izzy Newsham

Contact Information

Biography

Jiayin Hong, PhD

Contact Information

Biography

Mark Fernandes

Contact Information

Biography

Qi Wang, PhD

Contact Information

Biography

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